CDS

Accession Number TCMCG057C31084
gbkey CDS
Protein Id XP_018440771.1
Location join(4532543..4532625,4532717..4533033,4533165..4533234,4533319..4533434,4533599..4533630,4533724..4533849,4534350..4534508,4534787..4534879,4534973..4535140,4535242..4535340,4535891..4536117,4536201..4536258,4536343..4536431,4536616..4536741,4536875..4536997,4537173..4537271,4537371..4537559,4537685..4537856,4537935..4538085,4538196..4538398,4538603..4538744,4538885..4539045,4539133..4539249,4539344..4539415)
Gene LOC108812887
GeneID 108812887
Organism Raphanus sativus

Protein

Length 1063aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018585269.1
Definition PREDICTED: nuclear pore complex protein NUP107-like [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category UY
Description Nuclear pore protein 84 / 107
KEGG_TC 1.I.1
KEGG_Module M00427        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K14301        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03013        [VIEW IN KEGG]
map03013        [VIEW IN KEGG]
GOs GO:0000972        [VIEW IN EMBL-EBI]
GO:0000973        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0005198        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005635        [VIEW IN EMBL-EBI]
GO:0005643        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006403        [VIEW IN EMBL-EBI]
GO:0006405        [VIEW IN EMBL-EBI]
GO:0006406        [VIEW IN EMBL-EBI]
GO:0006606        [VIEW IN EMBL-EBI]
GO:0006611        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006886        [VIEW IN EMBL-EBI]
GO:0006913        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0006997        [VIEW IN EMBL-EBI]
GO:0006999        [VIEW IN EMBL-EBI]
GO:0008104        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0015031        [VIEW IN EMBL-EBI]
GO:0015833        [VIEW IN EMBL-EBI]
GO:0015931        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0017038        [VIEW IN EMBL-EBI]
GO:0017056        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0031080        [VIEW IN EMBL-EBI]
GO:0031090        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031503        [VIEW IN EMBL-EBI]
GO:0031965        [VIEW IN EMBL-EBI]
GO:0031967        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031975        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0033365        [VIEW IN EMBL-EBI]
GO:0034399        [VIEW IN EMBL-EBI]
GO:0034504        [VIEW IN EMBL-EBI]
GO:0034613        [VIEW IN EMBL-EBI]
GO:0034622        [VIEW IN EMBL-EBI]
GO:0042886        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045184        [VIEW IN EMBL-EBI]
GO:0046907        [VIEW IN EMBL-EBI]
GO:0046931        [VIEW IN EMBL-EBI]
GO:0050657        [VIEW IN EMBL-EBI]
GO:0050658        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051028        [VIEW IN EMBL-EBI]
GO:0051168        [VIEW IN EMBL-EBI]
GO:0051169        [VIEW IN EMBL-EBI]
GO:0051170        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0051236        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051292        [VIEW IN EMBL-EBI]
GO:0051641        [VIEW IN EMBL-EBI]
GO:0051649        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065003        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070727        [VIEW IN EMBL-EBI]
GO:0071166        [VIEW IN EMBL-EBI]
GO:0071426        [VIEW IN EMBL-EBI]
GO:0071427        [VIEW IN EMBL-EBI]
GO:0071702        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071705        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0072594        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGACACGGATATGGACACTTCTCCTAGCTACTTCGACCCCGAGGGCGTCCTCAGCGTCAGGGATCAATTCCGTCGCTACCGGAAGAGACACTCTACATCGCCGCACGAGGAGATCTCGAGTCGGAGTGTCAGTGAGAATAGGTTACTGTACGATGGGAATCACATCCATAGTCCGACGAACACTGCCTTGCTTCTTGAGAACATTAAAGAAGAGGTTGATAACTTTCACCCTCTCTCTGCTGCTGTTTCCCCGAGGAGTGGTGACGACGATGAGGCTCTGTTTCGTAGAGTTGAGAGTCAGTCACTGAAGGCTTGCAAGGTTGAGAATGATGAGTTGGCGGAGAGTGGAGATACTACTTTTGCTCTGTTTGCTTCTCTGTTTGATTCTGCTCTTCAAGGACTGATGCCCATTCCGGATCTAATATTGAGACTTGAGGACTCATGCAGGGATGTTTCTCAATCGATTAGGTATGGATCAGATGTAAGACATCGGGTTGTGGAGGATAAACTTATGAGACAGAAGGCTCAGCTTTTGCTTGGTGAGGCTGCCTCCTGGTCACTTTTATGGAACCTATATGGAAAAGCTACTGAAGAAGTTCCGCAGGAATTGATTATGTCCCCATCGACATCTCATTTGGAGGCTTGTCAGTTTGTTGTAAACGACCATACAGCTCAGCTATGCCTTCGGATAGTCCTGTGGCTGGAAGATCTAGCTTCAAAATCACTTGATTTGGAAAGAAAGGTGAGGGGATCTCATGTGGGTACTTATCTTCCTAACGCTGGAGTGTGGCATCACACACAAAGATATCTCAAGAAAAATGGCTCTGCTGCTGATATTGTACGCCATTTGGACTTTGATTCCCCAACTCGTGAACAAGCTCGTCTTCTTCCTGATGATAAAAAACAAGATGAATCTCTTCTTGAGGATGTTTGGATTTTGTTAAGGGCTGGAAGAATAGAGGAGGCCTGTGATCTCTGCAGGTCCGCTGGCCAGCCATGGAGAGCTGCAACTTTGTGCCCCTTTTCTGGAATGGACATGTTTCCTTCTGTTGAAGCGTTGGTAAAGAATGGGAAAAACAGGACTCTCCAGGCTATCGAGCTGGAAAGTGGATTTGGCAATCAACTGCGTCTTTGGAAATGGGCTTCGTACTGTGCATCAGAGAAAATTGCAGAGCAGGATGGCGGCAAGCATGAAGTTGCTGTTTTTGCAAACCAATGCAGCAACCTGAACCGCATCTTGCCAATTTGTACTGATTGGGAGTCAGCTTGCTGGGCGATGGCAAAATCATGGCTTGATGTTCAAGTTGATCTAGAACTCGCCCAATCAAAGCCAGGCTTGACAGAAAAGTTTAGAAGTTGTCTTGATGAAAGCCCTGACACTATGCAAAATGGTTGTCAGGCTTCACTTGGACCAGAAGATTGGCCGCTCCATGTTCTGAACCAGCAACCCCGTGACCTTCCTGCTCTTCTTCAGAAACTCCATTCAGGGAAAATGGTACACGATGCGGTTGTCAGGGGATGCAAAGAGCAGCACCGACAAATTCAGATGACCCTTATGTCGGGGAATATCTCACATCTTCTTGATATACTATGGTCATGGATCGCGCCCTTAGAAGATGATCAAAGCAACTTTAGGCCCCATGGCGATCCTCATATGATAAAGTTCGGTGCTCACTTGGTGCTTGTTCTTAGGTATATGCTTGCTGACGAAATCAAGGACAGGGAGAAGCTCAGCAATGTTGGTGATCTTATTCTTCATATGTATTCGATGTTTCTATTTTCAAAACAACACGAAGAACTCGTAGGAATATATGCTTCTCAGCTTGCTCGTCACCGCTGCATCGAACTTTTTGTACACATGATGGAGCTAAGGATGCATAGCAGCGTACATGTGAAGTTCAAGATCTTCCTATCCGCTATGGAATACTTACCATTCTCTCACGTGGATGACTCGCAAGGAAATTTTGAGGAAATAGTTGACAGGGTTTTGTCAAGATCCCGGGAAATCAAACTTGCAAAATATGATCCCTCAGTTGATGTTGCAGAGCAGCATCGTCAACAGAGTCTTCAAAAAGCCATAGCCATTCAGTGGCTCTGTTTTACACCTCCATCTACTATAAAGGATGTCAAGGATGTTACTTCTAAATTACTCCTGCGATCTTTGATGCACAGCAACATACTTTTCCGAGAGTTTGCTTTGATCGCCATGTGGAGAGTGCCTGCAACTCCTGTGGGTGCACACACGCTTCTTAGTTTTCTTGCTGAACCTCTGAAGCAACTCTCAGAGAATCCAGAGACACTCGAGGATTATGTTTCCGAGAATTTACAGGAGTTCCAAGACTGGAATGAGTACTATTCCTGTGACGCAAAATATCGCAACTGGCTCAAATTCCAATTAGAGAATGCTGAAGTCACTGAATTGTCAGAAGAGGAAAATCAAAAAGTTGTAGTAGCAGCCAATGAGACTTTGGATTCTTCTTTGTCACTGCTCCTCAGAAAAGACAATCCCTGGTTGACATTTCTTGAAGACGATGTATTCGAGTCAGAAGAACATATGTTCCTTGAGTTGCATGCAACTGCGATGCTCTGTTTGCCTTCTGGTGAATGTTTGCGCCCAGATGCCACTGTCTGCGCGACATTAATGAGTGCGCTTTACGCTTCTGTCACGGAGGACGTTGTTTTGGACCGTCAGTTAATGGTAAATGTATCGATTTCATCAAGGGACAGCTACTGCATCGAGGTTGTGCTTCGGTGTTTAGCAACTGAAGGGGATGGACTTGGGCCACACAATGCCAATGATGGGGGTATTTTAAGTGCAGTTGCCGCAGCTGCTTTTAAAGGTGAGCTTACCAGGTTCCAGGCAGGTGTTACAATGGATATATCACGCCTAGACGCTTGGTATTCAAGCAAAGAGGGATCGCTTGAAACACCTGCAACTTATATTGTCCGCGGTCTCTGTAGGAGATGCTGTCTTCCAGAGCTAGTTCTTCGATCTATGCAGGTGTCTGTTTGTCTAATGGAGTCGGGAAATCCACCTGAATATCACGATGAACTGATTGAGCTCGTGGCTTCTGATGAAACTGGTTTTCTCTCTTTATTCAGCCAACAACAATTACAGGAGTTTATGTTGTTTGAGAGAGAATATCGTCTGTCTCAATTGGAGCTCCAGGAGGAACTTTCATCCTCTTGA
Protein:  
MDTDMDTSPSYFDPEGVLSVRDQFRRYRKRHSTSPHEEISSRSVSENRLLYDGNHIHSPTNTALLLENIKEEVDNFHPLSAAVSPRSGDDDEALFRRVESQSLKACKVENDELAESGDTTFALFASLFDSALQGLMPIPDLILRLEDSCRDVSQSIRYGSDVRHRVVEDKLMRQKAQLLLGEAASWSLLWNLYGKATEEVPQELIMSPSTSHLEACQFVVNDHTAQLCLRIVLWLEDLASKSLDLERKVRGSHVGTYLPNAGVWHHTQRYLKKNGSAADIVRHLDFDSPTREQARLLPDDKKQDESLLEDVWILLRAGRIEEACDLCRSAGQPWRAATLCPFSGMDMFPSVEALVKNGKNRTLQAIELESGFGNQLRLWKWASYCASEKIAEQDGGKHEVAVFANQCSNLNRILPICTDWESACWAMAKSWLDVQVDLELAQSKPGLTEKFRSCLDESPDTMQNGCQASLGPEDWPLHVLNQQPRDLPALLQKLHSGKMVHDAVVRGCKEQHRQIQMTLMSGNISHLLDILWSWIAPLEDDQSNFRPHGDPHMIKFGAHLVLVLRYMLADEIKDREKLSNVGDLILHMYSMFLFSKQHEELVGIYASQLARHRCIELFVHMMELRMHSSVHVKFKIFLSAMEYLPFSHVDDSQGNFEEIVDRVLSRSREIKLAKYDPSVDVAEQHRQQSLQKAIAIQWLCFTPPSTIKDVKDVTSKLLLRSLMHSNILFREFALIAMWRVPATPVGAHTLLSFLAEPLKQLSENPETLEDYVSENLQEFQDWNEYYSCDAKYRNWLKFQLENAEVTELSEEENQKVVVAANETLDSSLSLLLRKDNPWLTFLEDDVFESEEHMFLELHATAMLCLPSGECLRPDATVCATLMSALYASVTEDVVLDRQLMVNVSISSRDSYCIEVVLRCLATEGDGLGPHNANDGGILSAVAAAAFKGELTRFQAGVTMDISRLDAWYSSKEGSLETPATYIVRGLCRRCCLPELVLRSMQVSVCLMESGNPPEYHDELIELVASDETGFLSLFSQQQLQEFMLFEREYRLSQLELQEELSSS